Ecosystems Publications

Recent Publications

Uveges B. T., Howarth R. W., Sparks J. P. (2025). Fossil fuel methane emissions likely underestimated in a model based on atmospheric δ13C trends.. Proceedings Of The National Academy Of Sciences Of The United States Of America. 122:e2507837122. doi:

Conte M. H., Pedrosa-Pàmies R., Weber J. C., Johnson R. J. (2025). The climatology of the deep particle flux in the oligotrophic western North Atlantic gyre, 1978–2022. Progress In Oceanography. 234:103433. doi:

Woods P. H., Speth D. R., Laso-Pérez R., Utter D. R., Ruff S. E., Orphan V. J. (2025). Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea. Science Advances. 11:eadq5232. doi:

Valiela I., Chenoweth K., Day J. (2025). Meta-analysis of vegetation responses to experimental nitrogen enrichments done in salt marshes under different sea level rise regimes reveal interaction of N supply and sea level rise. The Science Of The Total Environment. 975:179198. doi:

Sullivan H. L., Holtzer J., Deegan L. A., Bowen J. L. (2025). The Effect of Runnels on Salt Marsh Sediment Dynamics, Vegetation, and Nitrogen Cycling. Estuaries And Coasts. 48:73. doi:

Joern G. M., Pedrosa-Pàmies R., Jiang X., Liu Z., Bochdansky A. B. (2025). Characterization of microbial biofilms on marine plastics: community development and density implications for vertical transport dynamics. Frontiers In Marine Science. 12:1581727. doi:

Malhotra A., Megonigal P., Forbrich I., Määttä T., Morris K., Bittencourt Peixoto R., Wilson S., Zheng J., Bailey V. (2025). Revisiting the primary production control on wetland methane emission. doi:

Peck E. K., Walker J. E., Ackerman K. V., Carr J., Correll M. D., Defne Z., Deegan L. A., Eaton M. J., Ganju N. K., Hartley M., Johnson C., Mercer J., Ruskin K. J., Woodruff J. D., Yellen B. (2025). Distribution and disturbances of ditches across salt marshes of the Northeast U.S. with implications for management and restoration. Journal Of Environmental Management. 376:124444. doi:

Peredo E. L., Thomas S., Cardon Z. G. (2025). Draft genome sequence of Mycobacterium sp. SA01 isolated from Sporobolus alterniflorus seedlings collected in Cape Cod (USA). Microbiology Resource Announcements. 14:e01025-e01024. doi:

Guimond J. A., Grande E., Michael H. A., Pratt D., Herndon E., Noyce G. L., Ward N. D., Forbrich I., Regier P., Berens M. J., Arora B. (2025). The hidden influence of terrestrial groundwater on salt marsh function and resilience. Nature Water. 3:157-166. doi:

Stegen J., Burgin A. J., Busch M. H., Fisher J. B., Ladau J., Abrahamson J., Kinsman-Costello L., Li L., Chen X., Datry T., McDowell N., Tatariw C., Braswell A., Deines J. M., Guimond J. A., Regier P., Rod K., Bam E. K. P., Fluet-Chouinard E., Forbrich I., Jaeger K. L., O'Meara T., Scheibe T., Seybold E., Sweetman J. N., Zheng J., Allen D. C., Herndon E., Middleton B. A., Painter S., Roche K., Scamardo J., Vander Vorste R., Boye K., Wohl E., Zimmer M., Hondula K., Laan M., Marshall A., Patel K. F. (2025). Reviews and syntheses: Variable inundation across Earth's terrestrial ecosystems. Biogeosciences. 22:995-1034. doi:

Pedrosa-Pamies R., Conte M. H., Weber J. C., Andersson A. J. (2025). Hurricane-Driven Transport of Bermuda Reef Carbonate Platform Sediments to the Deep Ocean. Journal Of Geophysical Research-Oceans. 130. doi:

Klionsky S. M., Neill C., Pulak A. M., Lawrence B. (2025). Hydrologic Restoration of Retired Cranberry Farms Leads to Species Rich Wetlands. Applied Vegetation Science. 28. doi:

Hinkle J. E., Chanton J. P., Moynihan M. A., Ruff S. E., Teske A. (2025). Complex bacterial diversity of Guaymas Basin hydrothermal sediments revealed by synthetic long-read sequencing (LoopSeq). Frontiers In Microbiology. 15. doi:

Tang A. C. I., Bohrer G., Malhotra A., Missik J., Machado-Silva F., Forbrich I. (2025). Rising Water Levels and Vegetation Shifts Drive Substantial Reductions in Methane Emissions and Carbon Dioxide Uptake in a Great Lakes Coastal Freshwater Wetland. Global Change Biology. 31. doi:

V. Popin G., de Resende M. E. B., Locatelli J. L., Santos R. S., Siqueira-Neto M., Brando P. M., Neill C., Cerri C. E. P. (2025). Land-use change and deep-soil carbon distribution on the Brazilian Amazon-Cerrado agricultural frontier. Agriculture Ecosystems & Environment. 381. doi:

Budy P., Pennock C. A., Messenger S., Pehrson H., Adler E., Thiede G. P., Christman N. R., Crump B. C., Giblin A. E., Kling G. W. (2025). Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure. Oecologia. 207. doi:

Hashim M. S., Conte M. H., Salter M. A., Pedrosa-Pamies R., Weber J. C., Hayden M. G., Wilson R. W., Perry C. T., Crowley S. F., Dennis P. F., Bish D., Subhas A. V. (2025). Fish Carbonates in the North Atlantic and Their Potential Role in the Carbon Cycle. Global Biogeochemical Cycles. 39. doi:

Jiang Q., Cao L., Han Y., Li S., Zhao R., Zhang X., Ruff S. E., Zhao Z., Peng J., Liao J., Zhu B., Wang M., Lin X., Dong X. (2025). Cold seeps are potential hotspots of deep-sea nitrogen loss driven by microorganisms across 21 phyla. Nature Communications. 16. doi:

Hopkinson C. S., Weston N. B., Vallino J. J., Garritt R. H., Forbrich I. (2025). Comparative Metabolism and Blue Carbon Sequestration of Two Wetland-Dominated Estuaries. Ocean-Land-Atmosphere Research. 4. doi:

Jakuba R. W., Williams T., Neill C., Costa J. E., McHorney R., Scott L., Howes B. L., Ducklow H. W., Erickson M., Rasmussen M. (2025). Buzzards Bay Water Quality Data from the Buzzards Bay Coalition’s Baywatchers Program 2021-2023. public url:

Simon S. A., Soares A. R., Bornemann T. L. V., Lange A., Griesdorn L., Fuentes A., Dieckmann M., Krok B. A., Ruff S. E., Hügler M., Moraru C., Probst A. J. (2025). Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing. Isme Communications. 5:ycaf041. doi:

Vallino J. J., Ahern O. M., Huber J. A. Deriving microbial food web structure by maximizing entropy production over variable timescales. doi:

Luo E., Pham N. D., Rogers T. J., Vallino J. J., Benner B. E., Trubl G., Huber J. A. Virus-mediated recycling of chemoautotrophic biomass. doi:

Elkassas S. M., Fortunato C. S., Grim S. L., Butterfield D. A., Holden J. F., Vallino J. J., Algar C. K., Allen L. Z., Larson B. T., Proskurowski G., Reddington E., Stewart L. C., Topçuoğlu B., Huber J. A. Metabolic and Population Profiles of Active Subseafloor Autotrophs in Young Oceanic Crust at Deep-Sea Hydrothermal Vents. doi: